Ice To See You: The Mr. Freeze of Microbes

in #steemstem7 years ago (edited)

In some ways, the history of civilization is the history of being clever with our food supply. As soon as we figured out how to get more food than we immediately needed, we started thinking up ways to preserve that food. Essentially, we entered into a race with microbes to see who got to eat the excess. We've known for centuries that low temperatures preserves food and the advent of reliable refrigeration changed everything. We must've felt pretty clever, but, we didn't know then about Pseudomonas syringae, the Mr. Freeze of Microbes, who has been using the cold to get food for millennia, if not longer.

800px-Frost_on_nettle_leaves.jpg

Ice forming on nettles, likely induced by P. syringae. Source Author: Robert Reisman

Feeding strategy

P. syringae is a member of one of my favorite genera, the pseudomonads. This is a pretty large genera and these guys are notorious for being highly adaptable and able to degrade an amazing amount of things, including some stuff we think of as disinfectants. P syringae isn't so fancy, it just wants to eat plants. But it has a problem - it is on the outside of the plant, so there's an annoying plant cell wall standing between it and all those yummy plant nutrients. Here is where P. syringae gets really cool - it manipulates the freezing temperature of water to burst open the plant's cells.

The best image of P. syringae entering a plant I could find is not available for reuse. It was orginally by James Kremer and Sheng Yang He of the Howard Hughes Medical Institute, and can be seen in this Pop. Sci. Article

Discovery

In fact, it is this strategy which lead to its discovery. Basically, Dr. Hoppe and his grad student (Paul Lindow), were studying corn fungus by grinding up infected plants, spraying new crops, and seeing what happened. During one frost, it became apparent that only those plants treated with infected material developed frost damage. From there, Lindow determined that P. syringae was the culprit.

lesions.jpg

Frost lesions attributable to P. syringae. Source

How does it work

Supercooled water

So, how does P. syringae pull off this feat of making ice? Well, the first thing you need to know is that the freezing point of water is 0°C, except when it isn't. In fact, under the right conditions, water can be liquid down to -40°C. We call water in that state supercooled. The conditions for the very lowest temperatures are very specific, but supercooled water at higher temperatures is not uncommon - in fact, this is how many plants survive the winter. What P. syringae does is alter those conditions so that the water can no longer be supercooled, and ice forms, breaking open the cell and allowing P. syringae to feed on all those yummy plant guts.

Ice nucleation active (INA) proteins

These proteins are the secret sauce used by P. syringae and they work by inducing water molecules to line up in a certain way. You may remember, water ice is highly ordered, and, speaking very loosely, the greater the amount of "order" in cold water, the more likely it is to freeze. The INA proteins organize the water nearby, which quickly ropes nearby liquid water molecules into lining up, and so on, until ice forms. There is a nice illustration of this starting around the 20s point of this video (not my own).

Interestingly enough, these proteins are very closely related to antifreeze proteins, which are used by various organisms to prevent water from freezing.

Type III Secretion System

All well and good, we know what P. syringae is, its overall strategy, and even how the protein payload it uses works. But how does it deliver that payload to where it's most useful? As you might have guessed from the name, it injects the proteins into the cells using a special kind of bacterial syringe, the type III secretion system. This system is really complex, really cool, and very useful - we find it in all sorts of Gram negative bacteria. What you need to know here though is that it's basically a biological hypodermic needle.

T3SS_needle_complex.svg.png

And you thought only nurses had scary needles. Source Author: Pixie

Ecological implications

Ecologically, P syringae was originally looked at because of its clear affect on plant growth, particularly its role in agricultural damage. It's quite cosmopolitan (which means it's widespread, not that it has atrocious fashion sense), but interestingly, it appears that there are multiple substrains (pathovars) specific to certain plants.

More recently, we've become aware of a much more widespread and fundamental role for P syringae. The INA proteins it uses to to burst cell walls really don't care whether or not they're in a cell, and we've suspected for a while that they may help ice and rain form. It turns out that P. syringae may be one of the fundamental sources of nucleation for rain and snow, making it one of the most important biological organisms responsible for the water cycle, right up there with plants and transpiration.

Biotechnology implications

Snow and water production

Both P. syringae and purified INA proteins have been used for bioprecipitation and can cause on-demand snow and rain. Perhaps the most famous instance was when it was used to ensure snow for the Winter Olympics in both Sochi and Vancouver

There is a nice youtube video (not my own) which explains this

Crop preservation

This bug, which normally kills crops, also has a lot of potential to save them. There exists a mutant strain, cleverly named ice-minus which does not produce the INA protein. The idea is that if you spray a crop with an abundance of the ice-minus strain, then the wildtype ice-positive strains of P syringae will not be able to get a foothold in the crop. Ecologically, this is a great example of what we call competitive antagonism. A similar (but not quite the same) strategy has been employed to great effect in eradicating the screwworm from North America. It's also similar to what we're proposing to do with gene drive mosquitoes to help combat insect-borne disease.

GMO Controversy

Although an early success for genetic engineering, the application of ice-minus bacteria was fraught with controversy, and set the stage for debates and ill-feeling on both sides, which continue to this day, such as in the debate to release the gene drive mosquitoes I mentioned earlier.

Conclusion

I hope you've enjoyed this look at what you may think to be a really cool microbe. One of the things that has kept me fascinated with bugs for decades is that there is no lack of weird little unique survival strategies that only get more and more interesting the more you read about.

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P. syringae really is a resilient microbe, it´s really awesome how it can change the properties of water to rise it´s cooling point. Great Post!

One or more of your photos is breaking some form of copyright or it is not sourced, whether it be that the photos require proper attribution or are licensed in such a way that they are not free to use. For more information, check out this post here on steemstem copyright standards.

Sincerely,
@kryzsec

Your first image is CC3.0 and requires way heavier attribution (you need to specify the author of the image and a little more, otherwise you are liable), specific to the first image it is actually different then some CC3.0 and by that I mean the author/copyright holder added in extra information stating the requirements for the attribution.
The second image I was unable to find the license,
third image was CC0 so you are completely fine there,
4rth image is CC3.0 and requires heavier attribution

The video I am not certain about specifically but it uses SYL (standard youtube license) and isn't CC0, though they could make it so you cannot embed videos, I would still be leary about embedding videos that you aren't CC0 or that you don't have explicit permission to use.

Post was good by the way!

First, thank you for the specific feedback. I imagine it's a lot of extra work for you beyond the bot, but it really helped me improve the article. I was only mildly aware of the different levels of CC and figured a google search with 'labelled for reuse' was sufficient.

I've updated my attributions where possible and have removed the embedded images and youtube video where not possible. I don't think it terribly affects the article quality in this case.

The video was probably fine and the attribution is good now.

Its okay! I wasn't really aware of the differences between the different CC licenses until recently and still I am learning. I liked your post btw, I don't want you to feel like I am picking on you or anything, I swear I do this to a few people.

If you want to use youtube video embeds, you can search youtube for CC0 videos (there is a way to do it) and a lot of content creators will likely say sure for you to put it in (its even more lovely when they have a website that answers that specific question, however if something says NC (Non-Commercial) I would avoid it as steemit could, by some, be considered commercial)

Anyways the attribution looks good.

I'm glad you liked the post, and I stay away from NC for the same reasons. I don't think you're picking on me. ;)

However, my first reaction when I saw only the bot post was to be a little irked. Both the name of the bot itself and something about the text made it feel a little like getting hit with a comment from cheetah.

I'm trying to think of suggestion for rewording it so it comes off more as 'We'd like to help you improve your articles' and less as a policing-bot type of thing. Perhaps something like:

"Hello, I'm a bot that checks to see if linked images have good attributions. By encouraging people to source their photos well and following steemstem copyright standards, we hope to improve the overall quality of the blockchain.

One or more of your photos either requires proper attribution or are licensed in such a way that they are not free to use. "