Take backup of Office 365 mailboxes to an Outlook PST, by using a secure and reliable 3rd party software, Kernel Office 365 Backup & Restore. The software supports to backup multiple files from Office 365 simultaneously. For more information about the software, visit- https://www.nucleustechnologies.com/office-365-backup/
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If you want to take a backup of your Office 365 mailboxes then, I suggest a trusted and more featured backup tool named as Shoviv Office 365 Backup. This software comes with advance features such as multiple mailboxes backup, full and Incremental backup, allow to schedule backup jobs, and many more.
For more info about this tool visit here: Office 365 backup and Restore