The difference between EOS and NEO is the use of parallel processing which allows for exponential scaling. Actually that is the difference between EOS and any other blockchain. The only other blockchain that is moving to parallel processing that I know of is STEEM with AppBase and ChainBase see page 3 of the Blue Paper.
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Parallel processing, I haven't heard of this term yet but it sounds a little bit like side-chains at first glance. I'll take a look at the link later.. have to get going..! thanks!
I recommend to read the following articles:
https://steemit.com/steem/@dantheman/the-real-blockchain-scalability-challenge
https://steemit.com/blockchain/@dantheman/how-to-process-100m-transfers-second-on-a-single-blockchain